File List

Here is a list of all documented files with brief descriptions:

[detail level 12345]

▼ doc
▼ howto
► use_cereal
load.hpp
store.hpp
▼ tutorial
► search
cleanup.hpp
▼ seqan3
▼ alignment
► aligned_sequence
aligned_sequence_concept.hpp	Includes the aligned_sequence and the related insert_gap and erase_gap functions to enable stl container support
all.hpp	Meta-header for the aligned sequence in the alignment module
debug_stream_alignment.hpp	The seqan3::debug_stream_type overload in order to print alignments
► band
all.hpp	Meta-header for the band implementations
static_band.hpp	Provides seqan3::band_static
► configuration
align_config_band.hpp	Provides seqan3::detail::align_config_band
align_config_debug.hpp	Provides seqan3::align_cfg::detail::debug
align_config_edit.hpp	Provides seqan3::align_cfg::edit_scheme
align_config_gap_cost_affine.hpp	Provides seqan3::align_config::gap_cost_affine
align_config_method.hpp	Provides global and local alignment configurations
align_config_min_score.hpp	Provides seqan3::align_cfg::min_score configuration
align_config_on_result.hpp	Provides seqan3::align_cfg::on_result
align_config_output.hpp	Provides configuration for alignment output
align_config_parallel.hpp	Provides seqan3::align_cfg::parallel configuration
align_config_result_type.hpp	Provides seqan3::align_cfg::detail::result_type
align_config_score_type.hpp	Provides alignment configuration seqan3::align_cfg::score_type
align_config_scoring_scheme.hpp	Provides seqan3::align_cfg::scoring_scheme
align_config_vectorised.hpp	Provides seqan3::align_cfg::vectorised configuration
all.hpp	Meta-header for the alignment configuration module
detail.hpp	Provides some utility functions for the alignment configurations
► matrix
► detail
affine_cell_proxy.hpp	Provides seqan3::detail::affine_cell_proxy
aligned_sequence_builder.hpp	Provides seqan3::detail::aligned_sequence_builder
alignment_matrix_column_major_range_base.hpp	Provides seqan3::detail::alignment_matrix_column_major_range_base
alignment_score_matrix_one_column.hpp	Provides seqan3::detail::alignment_score_matrix_one_column
alignment_score_matrix_one_column_banded.hpp	Provides seqan3::detail::alignment_score_matrix_one_column_banded
alignment_score_matrix_one_column_base.hpp	Provides seqan3::detail::alignment_score_matrix_one_column_base
alignment_score_matrix_proxy.hpp	Provides seqan3::detail::alignment_score_matrix_proxy
alignment_trace_matrix_base.hpp	Provides seqan3::detail::alignment_trace_matrix_base
alignment_trace_matrix_full.hpp	Provides seqan3::detail::alignment_trace_matrix_full
alignment_trace_matrix_full_banded.hpp	Provides seqan3::detail::alignment_trace_matrix_full_banded
alignment_trace_matrix_proxy.hpp	Provides seqan3::detail::alignment_trace_matrix_proxy
all.hpp	Meta-header for the detail block of the matrix sub-module
coordinate_matrix.hpp	Provides seqan3::detail::coordinate_matrix
matrix_coordinate.hpp	Provides seqan3::detail::alignment_coordinate and associated strong types
score_matrix_single_column.hpp	Provides seqan3::detail::score_matrix_single_column
trace_iterator.hpp	Provides seqan3::detail::trace_iterator
trace_iterator_banded.hpp	Provides seqan3::detail::trace_iterator_banded
trace_iterator_base.hpp	Provides seqan3::detail::trace_iterator_base
trace_matrix_full.hpp	Provides seqan3::detail::trace_matrix_full
two_dimensional_matrix.hpp	Provides seqan3::detail::two_dimensional_matrix
two_dimensional_matrix_iterator_base.hpp	Provides seqan3::detail::two_dimensional_matrix_iterator_base
two_dimensional_matrix_iterator_concept.hpp	Provides seqan3::detail::two_dimensional_matrix_iterator
alignment_coordinate.hpp	Provides seqan3::detail::alignment_coordinate
alignment_optimum.hpp	Provides seqan3::detail::alignment_optimum
alignment_trace_algorithms.hpp	Provides algorithms that operate on seqan3::detail::alignment_trace_matrix
all.hpp	Meta-header for the matrix sub-module
debug_matrix.hpp	Provides the declaration of seqan3::detail::debug_matrix
edit_distance_score_matrix_full.hpp	Provides seqan3::detail::edit_distance_score_matrix_full
edit_distance_trace_matrix_full.hpp	Provides seqan3::detail::edit_distance_trace_matrix_full
matrix_concept.hpp	Provides seqan3::detail::matrix
row_wise_matrix.hpp	Provides seqan3::detail::row_wise_matrix
trace_directions.hpp	Provides the declaration of seqan3::detail::trace_directions
► pairwise
► detail
alignment_algorithm_state.hpp	Provides seqan3::detail::alignment_algorithm_state
concept.hpp	Provides concepts needed internally for the alignment algorithms
pairwise_alignment_algorithm.hpp	Provides seqan3::detail::pairwise_alignment_algorithm
pairwise_alignment_algorithm_banded.hpp	Provides seqan3::detail::pairwise_alignment_algorithm
policy_affine_gap_recursion.hpp	Provides seqan3::detail::policy_affine_gap_recursion
policy_affine_gap_recursion_banded.hpp	Provides seqan3::detail::policy_affine_gap_recursion_banded
policy_alignment_matrix.hpp	Provides seqan3::detail::policy_alignment_matrix
policy_alignment_result_builder.hpp	Provides seqan3::detail::policy_alignment_result_builder
policy_optimum_tracker.hpp	Provides seqan3::detail::policy_optimum_tracker
policy_optimum_tracker_simd.hpp	Provides seqan3::detail::policy_optimum_tracker_simd
policy_scoring_scheme.hpp	Provides seqan3::detail::policy_scoring_scheme
type_traits.hpp	Provides helper type traits for the configuration and execution of the alignment algorithm
► policy
affine_gap_init_policy.hpp	Provides seqan3::detail::affine_gap_init_policy
affine_gap_policy.hpp	Provides seqan3::detail::affine_gap_policy
alignment_matrix_policy.hpp	Provides seqan3::detail::alignment_matrix_policy
all.hpp
find_optimum_policy.hpp	Provides seqan3::detail::find_optimum_policy
scoring_scheme_policy.hpp	Provides seqan3::detail::scoring_scheme_policy
simd_affine_gap_policy.hpp	Provides seqan3::detail::simd_affine_gap_policy
simd_find_optimum_policy.hpp	Provides seqan3::detail::simd_find_optimum_policy
align_pairwise.hpp	Provides pairwise alignment function
align_result_selector.hpp	Provides seqan3::detail::align_result_selector
alignment_algorithm.hpp	Provides seqan3::detail::alignment_algorithm
alignment_configurator.hpp	Provides seqan3::detail::alignment_selector
alignment_result.hpp	Provides seqan3::alignment_result
all.hpp	Meta-header for the pairwise submodule
edit_distance_algorithm.hpp	Provides seqan3::detail::edit_distance_algorithm
edit_distance_fwd.hpp	Forwards for seqan3::edit_distance_unbanded related types
edit_distance_unbanded.hpp	Provides a pairwise alignment algorithm for edit distance but without band
► scoring
► detail
simd_match_mismatch_scoring_scheme.hpp	Provides seqan3::detail::simd_match_mismatch_scoring_scheme
simd_matrix_scoring_scheme.hpp	Provides seqan3::detail::simd_matrix_scoring_scheme
all.hpp	Meta-header for the Scoring sub-module
aminoacid_scoring_scheme.hpp	Provides seqan3::aminoacid_scoring_scheme
gap_scheme.hpp	Provides seqan3::gap_scheme
nucleotide_scoring_scheme.hpp	Provides seqan3::nucleotide_scoring_scheme
scoring_scheme_base.hpp	Provides seqan3::scoring_scheme_base
scoring_scheme_concept.hpp	Provides seqan3::scoring_scheme_for
all.hpp	Meta-header for the alignment module
exception.hpp	Includes customized exception types for the alignment module
▼ alphabet
► adaptation
all.hpp	Meta-header for the adaptation submodule; includes all headers from alphabet/adaptation/
char.hpp	Provides alphabet adaptations for standard char types
uint.hpp	Provides alphabet adaptations for standard uint types
► aminoacid
aa10li.hpp	Provides seqan3::aa10li, container aliases and string literals
aa10murphy.hpp	Provides seqan3::aa10murphy, container aliases and string literals
aa20.hpp	Provides seqan3::aa20, container aliases and string literals
aa27.hpp	Provides seqan3::aa27, container aliases and string literals
all.hpp	Meta-header for the aminoacid submodule; includes all headers from alphabet/aminoacid/
aminoacid_base.hpp	Provides seqan3::aminoacid_base
concept.hpp	Provides seqan3::aminoacid_alphabet
translation.hpp	Provides functions for translating a triplet of nucleotides into an amino acid
translation_details.hpp	Provides translation details for nucleotide to aminoacid translation
translation_genetic_code.hpp	Genetic codes used for translating a triplet of nucleotides into an amino acid
► cigar
all.hpp	Meta-header for the cigar submodule; includes all headers from alphabet/cigar/
cigar.hpp	Provides the seqan3::cigar alphabet
cigar_op.hpp	Introduces the cigar_op alphabet
► composite
all.hpp	Meta-header for the composite submodule; includes all headers from alphabet/composite/
alphabet_tuple_base.hpp	Provides seqan3::alphabet_tuple_base
alphabet_variant.hpp	Provides seqan3::alphabet_variant
detail.hpp	Provides implementation detail for seqan3::alphabet_variant and seqan3::alphabet_tuple_base
semialphabet_any.hpp	Provides seqan3::semialphabet_any
► detail
alphabet_proxy.hpp	Provides seqan3::alphabet_proxy
convert.hpp
► gap
all.hpp	Meta-header for the gap submodule; includes all headers from alphabet/gap/
gap.hpp	Provides seqan3::gap
gapped.hpp	Provides seqan3::gapped
► mask
all.hpp	Meta-header for the mask submodule; includes all headers from alphabet/mask/
mask.hpp	Create a mask composite which can be applied with another alphabet
masked.hpp	Extends a given alphabet with the mask alphabet
► nucleotide
all.hpp	Meta-header for the nucleotide submodule; includes all headers from alphabet/nucleotide/
concept.hpp	Provides seqan3::nucleotide_alphabet
dna15.hpp	Provides seqan3::dna15, container aliases and string literals
dna3bs.hpp	Provides seqan3::dna3bs, container aliases and string literals
dna4.hpp	Provides seqan3::dna4, container aliases and string literals
dna5.hpp	Provides seqan3::dna5, container aliases and string literals
nucleotide_base.hpp	Provides seqan3::nucleotide_base
rna15.hpp	Provides seqan3::rna15, container aliases and string literals
rna4.hpp	Provides seqan3::rna4, container aliases and string literals
rna5.hpp	Provides seqan3::rna5, container aliases and string literals
sam_dna16.hpp	Provides seqan3::sam_dna16
► quality
aliases.hpp	Provides aliases for qualified
all.hpp	Meta-header that includes all headers from alphabet/quality/
concept.hpp	Quality alphabet concept
phred42.hpp	Provides seqan3::phred42 quality scores
phred63.hpp	Provides seqan3::phred63 quality scores
phred68legacy.hpp	Provides seqan3::phred68legacy quality scores
qualified.hpp	Provides quality alphabet composites
quality_base.hpp	Provides seqan3::phred42 quality scores
► structure
all.hpp	Meta-header for the structure module. It includes all headers from alphabet/structure/
concept.hpp	Provides seqan3::rna_structure_alphabet
dot_bracket3.hpp	Provides the dot bracket format for RNA structure
dssp9.hpp	Provides the dssp format for protein structure
structured_aa.hpp	Provides the composite of aminoacid with structure alphabets
structured_rna.hpp	Provides the composite of nucleotide with structure alphabets
wuss.hpp	Provides the WUSS format for RNA structure
all.hpp	Meta-header for the alphabet module
alphabet_base.hpp	Provides seqan3::alphabet_base
concept.hpp	Core alphabet concept and free function/type trait wrappers
exception.hpp	Exceptions thrown by entities in the alphabet module
hash.hpp	Provides overloads for std::hash
▼ argument_parser
► detail
format_base.hpp	Provides the format_base struct containing all helper functions that are needed in all formats
format_help.hpp	Provides the format_help struct that print the help page to the command line and the two child formats (format_version, format_short_help) that print short help messages to the command line
format_html.hpp	Provides the format_html struct and its helper functions
format_man.hpp	Provides the format_man struct and its helper functions
format_parse.hpp	Provides the format_parse class
terminal.hpp	Checks if program is run interactively and retrieves dimensions of terminal (Transferred from seqan2)
version_check.hpp	Provides the version check functionality
all.hpp	Meta-Header for the argument parser module
argument_parser.hpp	Provides seqan3::argument_parser class
auxiliary.hpp	Provides auxiliary information
exceptions.hpp	Provides parser related exceptions
validators.hpp	Provides some standard validators for (positional) options
▼ contrib
► charconv
charconv_pre.hpp
► parallel
buffer_queue.hpp	Provides seqan3::buffer_queue
serialised_resource_pool.hpp	Provides helper structs from SeqAn2 for the bgzf_ostream
suspendable_queue.hpp	Provides seqan suspendable queue
► stream
bgzf_istream.hpp
bgzf_ostream.hpp
bgzf_stream_util.hpp	Provides stream compression utilities
bz2_istream.hpp
bz2_ostream.hpp
gz_istream.hpp
gz_ostream.hpp
▼ core
► algorithm
► detail
algorithm_executor_blocking.hpp	Provides seqan3::detail::algorithm_executor_blocking
all.hpp	Meta-header for the detail functionality of core algorithm
execution_handler_parallel.hpp	Provides seqan3::detail::execution_handler_parallel
execution_handler_sequential.hpp	Provides seqan3::detail::execution_handler_sequential
algorithm_result_generator_range.hpp	Provides seqan3::detail::algorithm_result_generator_range
all.hpp	Meta-Header for components of the algorithm submodule
bound.hpp	Provides seqan3::lower_bound and seqan3::upper_bound
concept.hpp	Provides concepts for the configuration classes
configuration.hpp	Provides seqan3::detail::configuration and utility functions
configuration_element_debug_mode.hpp	Provides seqan3::detail::debug_mode
configuration_element_parallel_mode.hpp	Provides seqan3::detail::parallel_mode
configuration_utility.hpp	Provides functionality to access get function by enum values
pipeable_config_element.hpp	Provides seqan3::pipeable_config_element
► char_operations
all.hpp	Provides Char predicates for tokenization
predicate.hpp	Provides character predicates for tokenisation
predicate_detail.hpp	Provides parse conditions for tokenization
pretty_print.hpp	Provides pretty printing for chars
transform.hpp	Provides utilities for modifying characters
► concept
all.hpp	Meta-include for custom concepts
cereal.hpp	Adaptions of concepts from the Cereal library
core_language.hpp	Provides concepts for core language types and relations that don't have concepts in C++20 (yet)
tuple.hpp	Provides seqan3::tuple_like
► detail
all.hpp	Meta-header for implementation details in the core module
customisation_point.hpp	Helper utilities for defining customisation point objects
debug_stream_alphabet.hpp	Provides seqan3::debug_stream and related types
debug_stream_optional.hpp	Provides seqan3::debug_stream and related types
debug_stream_range.hpp	Provides seqan3::debug_stream and related types
debug_stream_tuple.hpp	Provides seqan3::debug_stream and related types
debug_stream_type.hpp	Provides seqan3::debug_stream and related types
debug_stream_variant.hpp	Provides seqan3::debug_stream and related types
empty_type.hpp	Provides seqan3::detail::empty_type
endian.hpp	Provides seqan3::detail::endian
int_types.hpp	Provides metaprogramming utilities for integer types
pack_algorithm.hpp	Provides algorithms for meta programming, parameter packs and seqan3::type_list
strong_type.hpp	Provides basic data structure for strong types
test_accessor.hpp	Forward declares seqan3::detail::test_accessor
to_string.hpp	Auxiliary for pretty printing of exception messages
type_inspection.hpp	Provides traits to inspect some information of a type, for example its name
► parallel
► detail
all.hpp	Provides implementation relevant helper objects and functions
latch.hpp	Provides seqan3::detail::latch
reader_writer_manager.hpp	Provides seqan3::detail::reader_writer_manager
spin_delay.hpp	Provides seqan3::detail::spin_delay
all.hpp	Meta-header for the parallel module
execution.hpp	Provides execution policies
► simd
► detail
builtin_simd.hpp	Provides seqan3::detail::builtin_simd, seqan3::detail::is_builtin_simd and seqan3::simd::simd_traits<builtin_simd_t>
builtin_simd_intrinsics.hpp	Provides intrinsics include for builtin simd
default_simd_backend.hpp	Provides seqan3::detail::default_simd_backend
default_simd_length.hpp	Provides seqan3::detail::default_simd_length and seqan3::detail::default_simd_max_length
simd_algorithm_avx2.hpp	Provides specific algorithm implementations for AVX2 instruction set
simd_algorithm_avx512.hpp	Provides specific algorithm implementations for AVX512 instruction set
simd_algorithm_sse4.hpp	Provides specific algorithm implementations for SSE4 instruction set
all.hpp	Meta-header for the simd module
concept.hpp	Provides seqan3::simd::simd_concept
debug_stream_simd.hpp	Provides seqan3::debug_stream overload for seqan3::simd::simd_type
simd.hpp	Provides seqan3::simd::simd_type
simd_algorithm.hpp	Provides algorithms to modify seqan3::simd::simd_type
simd_traits.hpp	Provides seqan3::simd::simd_traits
view_iota_simd.hpp	Provides seqan3::detail::counted_simd_iterator and seqan3::views::iota_simd
view_to_simd.hpp	Provides seqan3::detail::to_simd view
► type_list
all.hpp	Provides seqan3::type_list and metaprogramming utilities
traits.hpp	Provides traits for seqan3::type_list
type_list.hpp	Provides seqan3::type_list
► type_traits
all.hpp	Provides various type traits
basic.hpp	Provides various type traits on generic types
concept.hpp	Provides the concepts seqan3::transformation_trait and seqan3::unary_type_trait
deferred_crtp_base.hpp	Provides seqan3::detail::deferred_crtp_base
function.hpp	Provides various type traits for use on functions
iterator.hpp	Provides various transformation traits for use on iterators
lazy.hpp	Provides lazy template instantiation traits
pack.hpp	Provides unary type traits on a set of types, usually provided as template argument pack
pre.hpp	Provides various transformation trait base templates and shortcuts
range.hpp	Provides various transformation traits used by the range module
template_inspection.hpp	Provides seqan3::type_list and auxiliary type traits
transformation_trait_or.hpp	Provides seqan3::detail::transformation_trait_or
add_enum_bitwise_operators.hpp	Provides seqan3::add_enum_bitwise_operators
all.hpp	Meta-header for the core module
bit_manipulation.hpp	Provides utility functions for bit twiddling
common_tuple.hpp	Provides seqan3::common_tuple and seqan3::common_pair
debug_stream.hpp	Provides seqan3::debug_stream and related types
math.hpp	Provides math related functionality
platform.hpp	Provides platform and dependency checks
pod_tuple.hpp	Provides seqan3::pod_tuple
semiregular_box.hpp	Provides seqan3::semiregular_box
tuple_utility.hpp	Provides utility functions for tuple like interfaces
▼ io
► alignment_file
all.hpp	Meta-include for the alignment IO submodule
detail.hpp	Auxiliary functions for the alignment IO
format_bam.hpp	Provides the seqan3::format_bam
format_sam.hpp	Provides the seqan3::format_sam
format_sam_base.hpp	Provides the seqan3::format_sam_base that can be inherited from
header.hpp	Provides the seqan3::alignment_file_header class
input.hpp	Provides seqan3::alignment_file_input and corresponding traits classes
input_format_concept.hpp	Provides seqan3::alignment_file_input_format and auxiliary classes
input_options.hpp	Provides seqan3::alignment_file_input_options
misc.hpp	Provides helper data structures for the seqan3::alignment_file_output
output.hpp	Provides seqan3::alignment_file_output and corresponding traits classes
output_format_concept.hpp	Provides seqan3::alignment_file_output_format and auxiliary classes
output_options.hpp	Provides seqan3::alignment_file_output_options
sam_tag_dictionary.hpp	Provides the seqan3::sam_tag_dictionary class and auxiliaries
► detail
ignore_output_iterator.hpp	Provides seqan3::detail::ignore_output_iterator for writing to null stream
in_file_iterator.hpp	Provides the seqan3::detail::in_file_iterator class template
magic_header.hpp	Provides seqan3::detail::magic_header
misc.hpp	Provides various utility functions
misc_input.hpp	Provides various utility functions required only for input
misc_output.hpp	Provides various utility functions required only for output
out_file_iterator.hpp	Provides the seqan3::detail::out_file_iterator class template
record.hpp
safe_filesystem_entry.hpp	Provides seqan3::detail::safe_filesystem_entry
► sequence_file
all.hpp	Meta-include for the sequence IO submodule
format_embl.hpp
format_fasta.hpp
format_fastq.hpp
format_genbank.hpp	Provides the seqan3::sequence_file_format_genbank class
input.hpp	Provides seqan3::sequence_file_input and corresponding traits classes
input_format_concept.hpp	Provides seqan3::sequence_file_input_format and auxiliary classes
input_options.hpp	Provides seqan3::sequence_file_input_options
output.hpp	Provides seqan3::sequence_file_output and corresponding traits classes
output_format_concept.hpp	Provides seqan3::sequence_file_output_format and auxiliary classes
output_options.hpp	Provides seqan3::sequence_file_output_options
► stream
all.hpp	Meta-header for all stream related functionality
concept.hpp	Stream concepts
iterator.hpp	Provides seqan3::fast_istreambuf_iterator and seqan3::fast_ostreambuf_iterator, as well as, seqan3::ostream and seqan3::ostreambuf iterator
► structure_file
all.hpp	Meta-include for the structure IO submodule
detail.hpp	Helper functions (e.g. conversions) for the structure IO submodule
format_vienna.hpp	Provides the seqan3::format_vienna
input.hpp	Provides seqan3::structure_file_input and corresponding traits classes
input_format_concept.hpp	Provides seqan3::structure_file_input_format
input_options.hpp	Provides seqan3::structure_file_input_options
output.hpp	Provides seqan3::structure_file_output and corresponding traits classes
output_format_concept.hpp	Provides seqan3::structure_file_output_format and auxiliary classes
output_options.hpp	Provides seqan3::structure_file_output_options
all.hpp	Meta-header for all IO related functionality
exception.hpp	Provides exceptions used in the I/O module
record.hpp	Provides the seqan3::record template and the seqan3::field enum
▼ range
► container
aligned_allocator.hpp	Provides seqan3::aligned_allocator
all.hpp	Meta-header for the container submodule
bitcompressed_vector.hpp	Provides seqan3::bitcompressed_vector
concatenated_sequences.hpp	Provides seqan3::concatenated_sequences
concept.hpp	Adaptations of concepts from the standard library
dynamic_bitset.hpp	A constexpr bitset implementation with dynamic size at compile time
small_string.hpp	A constexpr string implementation to manipulate string literals at compile time
small_vector.hpp	A constexpr vector implementation with dynamic size at compile time
► decorator
all.hpp	Meta-header for the decorator submodule
gap_decorator.hpp	Provides seqan3::gap_decorator
► detail
inherited_iterator_base.hpp	Provides the seqan3::detail::inherited_iterator_base template
misc.hpp	Provides various utility functions
random_access_iterator.hpp	Provides the seqan3::detail::random_access_iterator class
► views
all.hpp	Meta-header for the views submodule
as_const.hpp	Provides seqan3::views::as_const
async_input_buffer.hpp	Provides seqan3::views::async_input_buffer
char_to.hpp	Provides seqan3::views::char_to
chunk.hpp	Provides seqan3::views::chunk
complement.hpp	Provides seqan3::views::complement
convert.hpp	Provides seqan3::views::convert
deep.hpp	Provides seqan3::views::deep
detail.hpp	Auxiliary header for the views submodule
drop.hpp	Provides seqan3::views::drop
enforce_random_access.hpp	Provides seqan3::views::enforce_random_access
get.hpp	Provides seqan3::views::get
interleave.hpp	Provides seqan3::views::interleave
istreambuf.hpp	Provides seqan3::views::istreambuf
join.hpp	Provides seqan3::views::join
kmer_hash.hpp	Provides seqan3::views::kmer_hash
minimiser.hpp	Provides seqan3::views::minimiser
minimiser_hash.hpp	Provides seqan3::views::minimiser_hash
move.hpp	Provides seqan3::views::move
pairwise_combine.hpp	Provides seqan3::views::pairwise_combine
persist.hpp	Provides seqan3::views::persist
rank_to.hpp	Provides seqan3::views::rank_to
repeat.hpp	Provides the views::repeat_view
repeat_n.hpp	Provides seqan3::views::repeat_n
single_pass_input.hpp	Provides seqan3::single_pass_input_view
slice.hpp	Provides seqan3::views::slice
take.hpp	Provides seqan3::views::take
take_exactly.hpp	Provides seqan3::views::take_exactly and seqan3::views::take_exactly_or_throw
take_line.hpp	Provides seqan3::views::take_line and seqan3::views::take_line_or_throw
take_until.hpp	Provides seqan3::views::take_until and seqan3::views::take_until_or_throw
to.hpp	Provides seqan3::views::to
to_char.hpp	Provides seqan3::views::to_char
to_lower.hpp	Provides seqan3::views::to_lower
to_rank.hpp	Provides seqan3::views::to_rank
to_upper.hpp	Provides seqan3::views::to_upper
translate.hpp	Provides seqan3::views::translate and seqan3::views::translate_single
translate_join.hpp	Provides seqan3::views::translate_join
trim_quality.hpp	Provides seqan3::views::trim_quality
type_reduce.hpp	Provides seqan3::views::type_reduce
zip.hpp	Provides seqan3::views::zip
all.hpp	Meta-header for the range module
concept.hpp	Additional non-standard concepts for ranges
hash.hpp	Provides overloads for std::hash
shortcuts.hpp	Provides various shortcuts for common std::ranges functions
▼ search
► configuration
all.hpp	Meta-header for the search configuration module
default_configuration.hpp	Provides the default configuration for the seqan3::search() interface
detail.hpp	Provides compatibility matrix for search configurations
hit.hpp	Provides the configuration to define the hit strategies "hit_strata", "hit_all", "hit_all_best", "hit_single_best"
max_error.hpp	Provides the configuration for maximum number of errors for all error types
max_error_common.hpp	Provides the error types for maximum number of errors
on_result.hpp	Provides seqan3::search_cfg::on_result
output.hpp	Provides the configuration for the content of the search result
parallel.hpp	Provides seqan3::search_cfg::parallel configuration
result_type.hpp	Provides seqan3::search_cfg::detail::result_type
► detail
policy_max_error.hpp	Provides the seqan3::detail::policy_max_error
policy_search_result_builder.hpp	Provides the seqan3::detail::policy_search_result_builder
search_common.hpp	Provides data structures used by different search algorithms
search_configurator.hpp	Provides seqan3::detail::search_configurator
search_scheme_algorithm.hpp	Provides the algorithm to search in an index using search schemes
search_scheme_precomputed.hpp	Provides the data structures and precomputed instances for (optimum) search schemes
search_traits.hpp	Provides seqan3::detail::search_traits
unidirectional_search_algorithm.hpp	Provides an approximate string matching algorithm based on simple backtracking. This should only be used as a reference for unit testing
► dream_index
all.hpp	Meta-header for the DREAM index module
interleaved_bloom_filter.hpp	Provides seqan3::interleaved_bloom_filter
► fm_index
► detail
fm_index_cursor.hpp	Provides the internal representation of a node of the seqan3::fm_index_cursor
all.hpp	Meta-header for the FM index module
bi_fm_index.hpp	Provides the bidirectional seqan3::bi_fm_index
bi_fm_index_cursor.hpp	Provides the seqan3::bi_fm_index_cursor for searching in the bidirectional seqan3::bi_fm_index
concept.hpp	Provides the concepts for seqan3::fm_index and seqan3::bi_fm_index and its traits and cursors
fm_index.hpp	Provides the unidirectional seqan3::fm_index
fm_index_cursor.hpp	Provides the seqan3::fm_index_cursor for searching in the unidirectional seqan3::fm_index
► kmer_index
all.hpp	Meta-header for the kmer_index module
shape.hpp	Provides seqan3::shape
all.hpp	Meta-header for the search module
search.hpp	Provides the public interface for search algorithms
search_result.hpp	Provides seqan3::search_result
▼ std
algorithm	Adaptations of algorithms from the Ranges TS
charconv	Provides std::from_chars and std::to_chars if not defined in the stl <charconv> header
concepts	The Concepts library
filesystem	This header includes C++17 filesystem support and imports it into namespace std::filesystem (independent of whether it is marked as "experimental")
iterator	Provides C++20 additions to the <iterator> header
new	Provides C++17/20 additions to the <new> header, if they are not already available
ranges	Adaptations of concepts from the Ranges TS
span	Provides std::span from the C++20 standard library
type_traits	Provides C++20 additions to the type_traits header
version.hpp	Provides SeqAn version macros and global variables