format_bam.hpp File Reference

Provides the seqan3::format_bam. More...

#include <iterator>
#include <string>
#include <vector>
#include <seqan3/alphabet/detail/convert.hpp>
#include <seqan3/alphabet/nucleotide/sam_dna16.hpp>
#include <seqan3/core/bit_manipulation.hpp>
#include <seqan3/core/char_operations/predicate.hpp>
#include <seqan3/core/concept/core_language.hpp>
#include <seqan3/core/concept/tuple.hpp>
#include <seqan3/core/detail/to_string.hpp>
#include <seqan3/core/type_traits/range.hpp>
#include <seqan3/core/type_traits/template_inspection.hpp>
#include <seqan3/io/alignment_file/detail.hpp>
#include <seqan3/io/alignment_file/format_sam_base.hpp>
#include <seqan3/io/alignment_file/header.hpp>
#include <seqan3/io/alignment_file/input_format_concept.hpp>
#include <seqan3/io/alignment_file/input_options.hpp>
#include <seqan3/io/alignment_file/misc.hpp>
#include <seqan3/io/alignment_file/output_format_concept.hpp>
#include <seqan3/io/alignment_file/output_options.hpp>
#include <seqan3/io/alignment_file/sam_tag_dictionary.hpp>
#include <seqan3/io/detail/ignore_output_iterator.hpp>
#include <seqan3/io/detail/misc.hpp>
#include <seqan3/range/detail/misc.hpp>
#include <seqan3/range/views/slice.hpp>
#include <seqan3/range/views/take_exactly.hpp>
#include <seqan3/range/views/take_until.hpp>
#include <seqan3/std/concepts>
#include <seqan3/std/ranges>

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Classes
class	seqan3::format_bam
	The BAM format. More...

Namespaces
	seqan3
	The main SeqAn3 namespace.

Detailed Description

Provides the seqan3::format_bam.

Author

Svenja Mehringer <svenja.mehringer AT fu-berlin.de>