gap_decorator.hpp File Reference

Provides seqan3::gap_decorator. More...

#include <limits>
#include <set>
#include <tuple>
#include <type_traits>
#include <seqan3/alignment/exception.hpp>
#include <seqan3/alphabet/concept.hpp>
#include <seqan3/alphabet/gap/gap.hpp>
#include <seqan3/alphabet/gap/gapped.hpp>
#include <seqan3/range/container/concept.hpp>
#include <seqan3/range/detail/inherited_iterator_base.hpp>
#include <seqan3/range/detail/random_access_iterator.hpp>
#include <seqan3/range/views/type_reduce.hpp>
#include <seqan3/std/algorithm>
#include <seqan3/std/ranges>

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Classes
class	seqan3::gap_decorator< inner_type >
	A gap decorator allows the annotation of sequences with gap symbols while leaving the underlying sequence unmodified. More...
class	seqan3::gap_decorator< inner_type >::gap_decorator_iterator
	The iterator type over a seqan3::gap_decorator. More...

Namespaces
	seqan3
	The main SeqAn3 namespace.

Functions
Type deduction guides
template<std::ranges::viewable_range urng_t>
	seqan3::gap_decorator (urng_t &&range) -> gap_decorator< std::remove_reference_t< urng_t > const & >
	Ranges (not views!) always deduce to const & range_type since they are access-only anyway.
template<std::ranges::view urng_t>
	seqan3::gap_decorator (urng_t range) -> gap_decorator< urng_t >
	Views always deduce to their respective type because they are copied.

Detailed Description

Provides seqan3::gap_decorator.

Author

Marie Hoffmann <marie.hoffmann AT fu-berlin.de>

Svenja Mehringer <svenja.mehringer AT fu-berlin.de>