hit.hpp File Reference

Provides the configuration to define the hit strategies "hit_strata", "hit_all", "hit_all_best", "hit_single_best". More...

#include <variant>
#include <seqan3/core/algorithm/pipeable_config_element.hpp>
#include <seqan3/core/detail/empty_type.hpp>
#include <seqan3/core/type_list/traits.hpp>
#include <seqan3/search/configuration/detail.hpp>

Include dependency graph for hit.hpp:

This graph shows which files directly or indirectly include this file:

Go to the source code of this file.

Classes
class	seqan3::search_cfg::hit
	A dynamic configuration element to configure the hit strategy at runtime. More...
class	seqan3::search_cfg::hit_all
	Configuration element to receive all hits within the error bounds. More...
class	seqan3::search_cfg::hit_all_best
	Configuration element to receive all hits with the lowest number of errors within the error bounds. More...
class	seqan3::search_cfg::hit_single_best
	Configuration element to receive a single best hit with the lowest number of errors within the error bounds. More...
class	seqan3::search_cfg::hit_strata
	Configuration element to receive all hits with the best number of errors plus the given stratum. All hits are found with the fewest number of errors plus 'stratum'. More...

Namespaces
	seqan3
	The main SeqAn3 namespace.
	seqan3::search_cfg
	A special sub namespace for the search configurations.

Detailed Description

Provides the configuration to define the hit strategies "hit_strata", "hit_all", "hit_all_best", "hit_single_best".

Author

Christopher Pockrandt <christopher.pockrandt AT fu-berlin.de>

Rene Rahn <rene.rahn AT fu-berlin.de>

Svenja Mehringer <svenja.mehringer AT fu-berlin.de>