output.hpp File Reference

Provides seqan3::sequence_file_output and corresponding traits classes. More...

#include <cassert>
#include <fstream>
#include <string>
#include <variant>
#include <vector>
#include <seqan3/core/detail/pack_algorithm.hpp>
#include <seqan3/core/type_list/traits.hpp>
#include <seqan3/core/concept/tuple.hpp>
#include <seqan3/io/stream/concept.hpp>
#include <seqan3/io/exception.hpp>
#include <seqan3/std/filesystem>
#include <seqan3/io/record.hpp>
#include <seqan3/io/detail/misc.hpp>
#include <seqan3/io/detail/misc_output.hpp>
#include <seqan3/io/detail/out_file_iterator.hpp>
#include <seqan3/io/detail/record.hpp>
#include <seqan3/io/sequence_file/format_embl.hpp>
#include <seqan3/io/sequence_file/format_fasta.hpp>
#include <seqan3/io/sequence_file/format_fastq.hpp>
#include <seqan3/io/sequence_file/format_genbank.hpp>
#include <seqan3/io/alignment_file/format_sam.hpp>
#include <seqan3/io/sequence_file/output_format_concept.hpp>
#include <seqan3/io/sequence_file/output_options.hpp>
#include <seqan3/range/views/convert.hpp>
#include <seqan3/range/views/get.hpp>
#include <seqan3/range/views/zip.hpp>
#include <seqan3/std/ranges>

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Classes
class	seqan3::sequence_file_output< selected_field_ids_, valid_formats_ >
	A class for writing sequence files, e.g. FASTA, FASTQ ... More...

Namespaces
	seqan3
	The main SeqAn3 namespace.

Detailed Description

Provides seqan3::sequence_file_output and corresponding traits classes.

Author

Hannes Hauswedell <hannes.hauswedell AT fu-berlin.de>